PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g17800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 373aa    MW: 42768.3 Da    PI: 8.4767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g17800genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.61.2e-065880123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++C+ sF r  nL+ H r+H
  CA05g17800 58 YVCEICNLSFQREQNLQMHRRRH 80
                9*********************9 PP

2zf-C2H216.52.3e-05136157223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C++C+k +  +s++k Hi+t+
  CA05g17800 136 ICQKCNKGYAVQSDYKAHIKTC 157
                 7*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.04E-55780No hitNo description
Gene3DG3DSA:3.30.160.609.6E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.1E-65781IPR007087Zinc finger, C2H2
SMARTSM003559.9E-45880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6995880IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035516099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-4126156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.04E-5130155No hitNo description
SMARTSM0035552135162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MLASHSFLFG SPSNYSDQFS SPENGFIIKR KRRPAGTPDP DAQVVYLTAE MLMESDRYVC  60
EICNLSFQRE QNLQMHRRRH KVPWKLKKKM DQVIKKRVYV CPEPSCVHHD PCHALGDLVG  120
IKKHFRRKHS NYKQWICQKC NKGYAVQSDY KAHIKTCGTR GHSCDCGRVF SRVETFIEHQ  180
DSCKPQSSTT TTTTKECHDV QTTNPIFLPT TTTTTHHPHD QYSRILPNLD LELFTSPNYN  240
NQDTNYYSPF EQQNEHTPQS NMSSFVGQSH DNYIVQNNEA KNIIEEATTQ VSRLKSEANE  300
ILKIVMEEKA MAEEKRQEAK CLIELANLEM AKAREITQSI IGSSSSSHVM KIIKCSSCTN  360
LSNYLSSSIY RR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-120HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554132.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotQ9C9X71e-104IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLK4C2820.0K4C282_SOLLC; Uncharacterized protein
STRINGSolyc05g054030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-103indeterminate(ID)-domain 14